Principles and Color Matching of Secondary Antibody Selection

Principles and Color Matching of Secondary Antibody SelectionAntibody

Antibodies have been analyzed by X-ray crystallography, revealing that Ig consists of four polypeptide chains connected by varying numbers of interchain disulfide bonds. Ig can form a “Y” shaped structure, known as an Ig monomer, which is the basic unit of antibodies.

Principles and Color Matching of Secondary Antibody SelectionPrinciples and Color Matching of Secondary Antibody Selection

Basic Unit of Antibody

The primary antibody specifically recognizes and binds to the antigen, such as the commonly used primary antibody in protein detection. The secondary antibody binds to the primary antibody, acting as an antibody to the antibody, primarily used to detect the presence of the antibody. In vitro protein detection, the primary antibody targets the antigen, while the secondary antibody targets the primary antibody.

Principles and Color Matching of Secondary Antibody SelectionPrinciples and Color Matching of Secondary Antibody Selection

The black “Y” represents the primary antibody, while the red “Y” represents the secondary antibody.

Principles and Color Matching of Secondary Antibody SelectionSelection of Secondary Antibodies

The selection of secondary antibodies for IF depends on the species source, type, and subtype of the primary antibody, as well as the detection segment and the labeling of different fluorophores.

Principles and Color Matching of Secondary Antibody Selection1. Distinguishing the Species Source of Primary Antibodies

The host source of the secondary antibody should differ from that of the primary antibody. The primary antibody can come from various sources, such as rabbits, mice, sheep, monkeys, and chickens… The secondary antibody should be chosen accordingly, e.g., anti-rabbit, anti-mouse, anti-sheep…

Examples of Secondary Antibody Choices:

Name Catalog Number Species Application
Rabbit Anti Sheep IgG (H&L) – Alexa Fluor 488 RS3230 Sheep Elisa, IF/ICC, FCM
Rabbit Anti Rat IgG (H&L) – Alexa Fluor 488 RS3229 Rat Elisa, IF/ICC, FCM
Goat Anti Rabbit IgG (H&L) – Alexa Fluor 488 RS3211 Rabbit Elisa, IF/ICC, FCM
Goat Anti Pig IgG (H&L) – Alexa Fluor 488 RS3210 Pig Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 488 RS3208 Mouse Elisa, IF/ICC, FCM
Rabbit Anti Monkey IgG (H&L) – Alexa Fluor 488 RS3226 Monkey Elisa, IF/ICC, FCM
Goat Anti Human IgG (H&L) – Alexa Fluor 488 RS3202 Human Elisa, IF/ICC, FCM
Rabbit Anti Horse IgG (H&L) – Alexa Fluor 488 RS3220 Horse Elisa, IF/ICC, FCM
Rabbit Anti Guinea Pig IgG (H&L) – Alexa Fluor 488 RS3219 Guinea Pig Elisa, IF/ICC, FCM
Rabbit Anti Goat IgG (H&L) – Alexa Fluor 488 RS3218 Goat Elisa, IF/ICC, FCM
Mouse Anti Duck IgY (H&L) – Alexa Fluor 488 RS3233 Duck Elisa, IF/ICC, FCM
Rabbit Anti Donkey IgG (H&L) – Alexa Fluor 488 RS3216 Donkey Elisa, IF/ICC, FCM
Rabbit Anti Dog IgG (H&L) – Alexa Fluor 488 RS3215 Dog Elisa, IF/ICC, FCM
Goat Anti Chicken IgY (H&L) – Alexa Fluor 488 RS3201 Chicken Elisa, IF/ICC, FCM
Rabbit Anti Cat IgG (H&L) – Alexa Fluor 488 RS3213 Cat Elisa, IF/ICC, FCM
Rabbit Anti Bovine IgG (H&L) – Alexa Fluor 488 RS3212 Bovine Elisa, IF/ICC, FCM

2. Distinguishing the Type, Subtype, and Segment of Primary Antibodies

Primary antibodies can be classified into five types based on the amino acid composition and arrangement of their heavy chain constant regions: IgM, IgD, IgG, IgA, and IgE, corresponding to the μ, δ, γ, α, and ε chains. Different classes of Ig have distinct characteristics, such as the number and position of disulfide bonds both within and between chains, the number of domains, and the length of the hinge region. Even within the same class of Ig, the amino acid composition of the hinge region and the number and position of disulfide bonds in the heavy chain can vary, allowing for further subclassification. For example, human IgG can be divided into four subclasses: IgG1, IgG2, IgG3, and IgG4; human IgA can be divided into IgA1 and IgA2 subclasses.

Principles and Color Matching of Secondary Antibody SelectionPrinciples and Color Matching of Secondary Antibody Selection

Antibody Classification

Light chains can be classified into two types: kappa (κ) chains and lambda (λ) chains. Based on this, Ig can be divided into two types: κ type and λ type.

Ig hydrolyzed by papain can be cleaved into two identical Fab segments and one Fc segment at the hinge region where the two heavy chains are linked by disulfide bonds near the N-terminus.

If the primary antibody is derived from a mouse, the following secondary antibodies can be chosen:

Name Catalog Number Species Application
FITC*Polyclonal Goat Anti Mouse IgA RS030611 Mouse IgA WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Rabbit Anti Mouse IgG(h+l) RS030613 Mouse IgG(h+l) WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse IgG2a RS030606 Mouse IgG2a WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse IgG3 RS030609 Mouse IgG3 WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse Kappa RS030614 Mouse Kappa WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse Lambda RS030615 Mouse Lambda WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse IgM(u chain) RS030610 Mouse IgM(uchain) WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse IgG1 RS030608 Mouse IgG1 WB, IHC-p, IF/ICC, ELISA
FITC*Polyclonal Goat Anti Mouse IgG2b RS030607 Mouse IgG2b WB, IHC-p, IF/ICC, ELISA

If detecting human-derived antibodies, the following secondary antibodies can be chosen:

Name Catalog Number Species Application
Goat Anti Human IgG Fab – Alexa Fluor 488 RS3203 Human Elisa, IF/ICC, FCM
Goat Anti Human IgG gamma chain – Alexa Fluor 488 RS3205 Human Elisa, IF/ICC, FCM
Goat Anti Human IgG+IgM+IgA – Alexa Fluor 488 RS3206 Human Elisa, IF/ICC, FCM
Goat Anti Human IgM mu chain – Alexa Fluor 488 RS3207 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgG (H&L) – Alexa Fluor 488 RS3221 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgG Fc – Alexa Fluor 488 RS3222 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgG gamma chain – Alexa Fluor 488 RS3223 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgG+IgM+IgA – Alexa Fluor 488 RS3224 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgM – Alexa Fluor 488 RS3225 Human Elisa, IF/ICC, FCM
Mouse Anti Human IgA – Alexa Fluor 488 RS3234 Human Elisa, IF/ICC, FCM
Mouse Anti Human IgG Fab – Alexa Fluor 488 RS3235 Human Elisa, IF/ICC, FCM
Mouse Anti Human IgG Fc – Alexa Fluor 488 RS3236 Human Elisa, IF/ICC, FCM
Mouse Anti Human Ig kappa chain – Alexa Fluor 488 RS3244 Human Elisa, IF/ICC, FCM
Mouse Anti Human Ig lambda chain – Alexa Fluor 488 RS3245 Human Elisa, IF/ICC, FCM
Goat Anti Human IgG F(ab’)2 – Alexa Fluor 488 RS3246 Human Elisa, IF/ICC, FCM
Rabbit Anti Human IgG F(ab’)2 – Alexa Fluor 488 RS3247 Human Elisa, IF/ICC, FCM
Mouse Anti Human IgM – Alexa Fluor 488 RS3238 Human Elisa, IF/ICC, FCM
Goat Anti Human IgG (H&L) – Alexa Fluor 488 RS3202 Human Elisa, IF/ICC, FCM
Goat Anti Human IgG Fc – Alexa Fluor 488 RS3204 Human Elisa, IF/ICC, FCM

3. Selection of Different Fluorophore Labels

FITC, or fluorescein isothiocyanate, is a widely used fluorophore that emits a bright yellow-green fluorescence. Its advantages include a small molecular weight, allowing several FITC molecules to label each antibody, providing good contrast; however, its disadvantage is relatively rapid quenching, and under weakly acidic conditions, the fluorescence of the FITC group is weaker.

Rhodamine and its derivatives emit yellow-red fluorescence, including TRITC and Texas Red. Rhodamine and its derivatives provide a distinct contrast with the green fluorescence of FITC, making them suitable for dual labeling or comparative staining. Their fluorescence quenching is slow, but their fluorescence intensity is relatively weak.

Cy dyes are a class of fluorophores, including green Cy2, yellow-red Cy3, red Cy5, and near-infrared Cy5.5, each differing slightly in structure and thus in absorption and emission wavelengths. They are highly water-soluble and photostable, with high quantum yield and insensitivity to pH and other environmental factors, making them suitable for multiplex staining.

Alexa Fluor is a series of fluorophores developed by Molecular Probes, Inc., which are particularly suitable for laser confocal applications. Their characteristics include excitation peaks that match laser lines, narrow emission peaks that facilitate multiple fluorescent labels. Their fluorescence intensity is superior to other dyes with similar spectral characteristics; they have better photostability, allowing for longer image collection times; they have good pH tolerance, maintaining high fluorescence levels across a wide pH range; and they are well water-soluble, preventing precipitation and aggregation of Alexa Fluor conjugated antibodies, resulting in excellent overall performance.

Principles and Color Matching of Secondary Antibody SelectionPrinciples and Color Matching of Secondary Antibody Selection

DyLight is a new type of fluorophore that, compared to traditional fluorophores, has a relatively small molecular weight, allowing more DyLight to be labeled on a large molecule. Additionally, individual DyLight fluorophores have stronger fluorescence intensity and better specificity; DyLight is more photostable, meaning it has higher resistance to quenching, and comes in a variety of types, DyLight 350-800, with many fluorescence options, providing excellent overall performance. Furthermore, DyLight also offers near-infrared and far-infrared secondary antibodies compatible with the Odyssey system, namely DyLight 680 and DyLight 800.

Principles and Color Matching of Secondary Antibody SelectionPrinciples and Color Matching of Secondary Antibody Selection

Examples of Secondary Antibody Choices:

Name Catalog Number Species Application
Goat Anti Mouse IgG (H&L) – Alexa Fluor 532 RS3308 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 680 RS4008 Mouse IF/ICC, FCM, WB
Goat Anti Mouse IgG (H&L) – Alexa Fluor 750 RS4108 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 790 RS4208 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 488 RS3208 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 594 RS3608 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 647 RS3808 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 405 RS3108 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 633 RS3708 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 555 RS3408 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 568 RS3508 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 660 RS3908 Mouse Elisa, IF/ICC, FCM
Goat Anti Mouse IgG (H&L) FITC RS2308 Mouse IF/ICC, FCM
Goat Anti Mouse IgG (H&L) – Alexa Fluor 350 RS3008 Mouse Elisa, IF/ICC, FCM
DyLight 488, Goat Anti Mouse IgG RS23210 Mouse IF/ICC, FCM
Dylight 680, Goat Anti Mouse IgG RS23710 Mouse IF/ICC, FCM, WB
Dylight 594, Goat Anti Mouse IgG RS23410 Mouse IF/ICC, FCM
Dylight 800, Goat Anti Mouse IgG RS23910 Mouse IF/ICC, FCM, WB
Dylight 649, Goat Anti Mouse IgG RS23610 Mouse IF/ICC, FCM
Dylight 549, Goat Anti Mouse IgG RS23310 Mouse IF/ICC, FCM
DyLight 350, Goat Anti Mouse IgG RS23010 Mouse IF/ICC, FCM
DyLight 405, Goat Anti Mouse IgG RS23110 Mouse IF/ICC, FCM

Principles and Color Matching of Secondary Antibody SelectionColor Matching for Secondary Antibodies

When performing multicolor detection, avoid cross-reactivity between antibodies, and ensure the primary antibodies are from different species sources. Avoid spectral overlap between fluorophores.

Commonly used dual combinations include Alexa Fluor 488/Alexa Fluor 594, Alexa Fluor 488/Alexa Fluor 555.

Commonly used triple combinations include Alexa Fluor 488/Alexa Fluor 594/Alexa Fluor 647.

Commonly used quadruple combinations include Alexa Fluor 488/Alexa Fluor 555/Alexa Fluor 594/Alexa Fluor 647.

Advantages of Immunoway Secondary Antibodies

Principles and Color Matching of Secondary Antibody Selection

1 Over 1000 varieties;

2 Corresponding secondary antibodies can be selected for primary antibodies sourced from rabbits, mice, sheep, monkeys, chickens, pigs, dogs, etc.;

3 Coverage for antibodies from the same species source, including different categories, subtypes, and segments;

4 Multiple options available, including FITC, Alexa Fluor series, DyLight series, etc.;

5 Some items are in stock, reasonably priced, and offer high cost-performance ratio.

If you have any needs, you can click on the “Read Original” link below for inquiries.

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Company Profile:

ImmunoWay Biotechnology Company (referred to as Immunoway) was founded in 2002 and registered its brand in Texas, USA, in 2012.

The company began R&D on immunohistochemistry-specific antibodies in 2014, guided by internationally renowned experts in monoclonal antibodies. The immunogens are designed for immunohistochemistry experiments, and the screening of monoclonal cell lines and antibody validation have been conducted using thousands of positive and negative slides to clarify tissue localization and cellular sub-localization. The antibodies are highly specific, sensitive, and produce low background, developed and produced according to the registration requirements for in vitro diagnostic reagents. Clinical immunohistochemistry is applied in the auxiliary diagnosis and differential diagnosis in pathology, providing objective guidance for disease treatment. Currently, the types of antibodies have reached nearly 200 types, covering the majority of detection indicators required for tumor pathology diagnosis, such as breast cancer, cervical cancer, colon cancer, gastric cancer, liver cancer, lymphoma, prostate cancer, thyroid cancer, etc.

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Principles and Color Matching of Secondary Antibody Selection

Principles and Color Matching of Secondary Antibody Selection

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