Under normal circumstances, I would enter the R interactive environment from the Linux terminal to installR packages:
R # Enter R environment
BiocManager::install(“ggplot2“) # Run the installation command in R
q() # Exit after installation is complete
Today, I will share with you the method of directly installing R packages from the Linuxterminal:
Method 1: Direct installation using conda
conda install -c conda-forge r-biocmanager
conda install -c bioconda bioconductor-ggplot2
Method 2: Single-line R command installation
R -e “BiocManager::install(‘ggplot2‘)”
R -e “install.packages(‘ggplot2’)”