The R+Python Combination May Be the Best Way to Analyze SCENIC
1. Introduction When using SCENIC for transcription factor co-expression network prediction, there is a particularly troublesome step involving runGenie3, which infers gene regulatory networks (GRN) based on the random forest algorithm. The output includes a matrix of TF-gene pairs and their regulatory strengths. This step not only consumes a lot of memory but also does … Read more
